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Updated tribble BED parsing code to use the official UCSC spec, and updated tests to match expected results. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4188 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-09-01 21:49:06 +00:00
parent 924e16f4f0
commit 33400074fa
1 changed files with 1 additions and 1 deletions
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2
java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java
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@ -30,7 +30,7 @@ import org.junit.Test;
import java.util.Arrays; import java.util.Arrays;
public class CompareCallableLociWalkerIntegrationTest extends WalkerTest { public class CompareCallableLociWalkerIntegrationTest extends WalkerTest {
final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable -o %s"; final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable.bed -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable.bed -o %s";
@Test @Test
public void testCompareCallableLociWalker1() { public void testCompareCallableLociWalker1() {