From 33400074faf7a0f8005ff8cdc24b034867e6456f Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 1 Sep 2010 21:49:06 +0000
Subject: [PATCH] Updated tribble BED parsing code to use the official UCSC
 spec, and updated tests to match expected results.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4188 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../coverage/CompareCallableLociWalkerIntegrationTest.java      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java
index 10a7b7caa..ee67aa312 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java
@@ -30,7 +30,7 @@ import org.junit.Test;
 import java.util.Arrays;
 
 public class CompareCallableLociWalkerIntegrationTest extends WalkerTest {
-    final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable -o %s";
+    final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable.bed -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable.bed -o %s";
 
     @Test
     public void testCompareCallableLociWalker1() {