diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java index 10a7b7caa..ee67aa312 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/coverage/CompareCallableLociWalkerIntegrationTest.java @@ -30,7 +30,7 @@ import org.junit.Test; import java.util.Arrays; public class CompareCallableLociWalkerIntegrationTest extends WalkerTest { - final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable -o %s"; + final static String commonArgs = "-R " + hg18Reference + " -T CompareCallableLoci -B:comp1,Bed " + validationDataLocation + "1kg_slx.chr1_10mb.callable.bed -B:comp2,Bed " + validationDataLocation + "ga2_slx.chr1_10mb.callable.bed -o %s"; @Test public void testCompareCallableLociWalker1() {