From 3303808a8f75ec0de1cffd0885d900203f56530d Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 1 Dec 2009 21:29:12 +0000
Subject: [PATCH] Yet more walkers moved to oneoffprojects. Made
 hybridselection subdir in playground.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2205 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/AlignedReadsHistoWalker.java                        | 2 +-
 .../walkers/NeighborhoodQualityWalker.java                      | 2 +-
 .../gatk => oneoffprojects}/walkers/ReadQualityScoreWalker.java | 2 +-
 .../walkers/{ => hybridselection}/HybSelPerformanceWalker.java  | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)
 rename java/src/org/broadinstitute/sting/{playground/gatk => oneoffprojects}/walkers/AlignedReadsHistoWalker.java (96%)
 rename java/src/org/broadinstitute/sting/{playground/gatk => oneoffprojects}/walkers/NeighborhoodQualityWalker.java (99%)
 rename java/src/org/broadinstitute/sting/{playground/gatk => oneoffprojects}/walkers/ReadQualityScoreWalker.java (99%)
 rename java/src/org/broadinstitute/sting/playground/gatk/walkers/{ => hybridselection}/HybSelPerformanceWalker.java (99%)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/AlignedReadsHistoWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlignedReadsHistoWalker.java
similarity index 96%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/AlignedReadsHistoWalker.java
rename to java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlignedReadsHistoWalker.java
index a9731cc64..946b58f13 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/AlignedReadsHistoWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlignedReadsHistoWalker.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers;
+package org.broadinstitute.sting.oneoffprojects.walkers;
 
 import net.sf.samtools.SAMRecord;
 import org.broadinstitute.sting.gatk.walkers.ReadWalker;
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/NeighborhoodQualityWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/NeighborhoodQualityWalker.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/NeighborhoodQualityWalker.java
rename to java/src/org/broadinstitute/sting/oneoffprojects/walkers/NeighborhoodQualityWalker.java
index e42f2db7c..d5737486b 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/NeighborhoodQualityWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/NeighborhoodQualityWalker.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers;
+package org.broadinstitute.sting.oneoffprojects.walkers;
 
 import org.broadinstitute.sting.gatk.walkers.LocusWalker;
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadQualityScoreWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/ReadQualityScoreWalker.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadQualityScoreWalker.java
rename to java/src/org/broadinstitute/sting/oneoffprojects/walkers/ReadQualityScoreWalker.java
index b081dca82..406532b91 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadQualityScoreWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/ReadQualityScoreWalker.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers;
+package org.broadinstitute.sting.oneoffprojects.walkers;
 
 import org.broadinstitute.sting.gatk.walkers.ReadWalker;
 import org.broadinstitute.sting.utils.cmdLine.Argument;
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/hybridselection/HybSelPerformanceWalker.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
rename to java/src/org/broadinstitute/sting/playground/gatk/walkers/hybridselection/HybSelPerformanceWalker.java
index 5636db94f..3442c1279 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HybSelPerformanceWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/hybridselection/HybSelPerformanceWalker.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers;
+package org.broadinstitute.sting.playground.gatk.walkers.hybridselection;
 
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;