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Merged bug fix from Stable into Unstable

This commit is contained in:
Ryan Poplin 2011-07-12 13:55:51 -04:00
parent c4c145afb9 73735863b0
commit 329c3d8050
1 changed files with 4 additions and 1 deletions
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5
public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java
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@ -867,7 +867,10 @@ public class VariantContext implements Feature { // to enable tribble intergrati
for ( String name : sampleNames ) {
if ( map.containsKey(name) ) throw new IllegalArgumentException("Duplicate names detected in requested samples " + sampleNames);
map.put(name, getGenotype(name));
final Genotype g = getGenotype(name);
if ( g != null ) {
map.put(name, g);
}
}
return map;