From 31d252c0a14d26691935459d25b69695e6068dab Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 26 Jan 2010 16:32:44 +0000
Subject: [PATCH] Now using the new VariantEval package.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2689 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GATK-GSA-Pipeline.xml | 23 -----------------------
 1 file changed, 23 deletions(-)
 delete mode 100644 packages/GATK-GSA-Pipeline.xml

diff --git a/packages/GATK-GSA-Pipeline.xml b/packages/GATK-GSA-Pipeline.xml
deleted file mode 100644
index 6f3b9497e..000000000
--- a/packages/GATK-GSA-Pipeline.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- NOTE: Uses playground.
-     ant clean playground package -Dexecutable=GATK-GSA-Pipeline -->
-<package name="GATK-GSA-Pipeline">
-  <version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
-  <executable name="GATK-GSA-Pipeline">
-    <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
-    <resource-bundle file="StingText.properties" />
-    <modules>
-      <module file="QualityScoresRecalibration.xml" />
-      <module file="LocalRealignmentAroundIndels.xml" />
-      <module file="UnifiedGenotyper.xml" />
-      <module file="VariantFiltration.xml" />
-      <module file="VariantAnnotator.xml" />
-      <module file="VariantEval.xml" />
-      <module file="FindContaminatingReadGroups.xml" />
-    </modules>
-    <dependencies>
-      <!-- Filters -->
-      <package name="org.broadinstitute.sting.gatk.filters" />
-    </dependencies>
-  </executable>
-</package>