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Now using the new VariantEval package. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2689 348d0f76-0448-11de-a6fe-93d51630548a
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kshakir 2010-01-26 16:32:44 +00:00
parent 0345d9f6a5
commit 31d252c0a1
1 changed files with 0 additions and 23 deletions
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packages/GATK-GSA-Pipeline.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!-- NOTE: Uses playground.
ant clean playground package -Dexecutable=GATK-GSA-Pipeline -->
<package name="GATK-GSA-Pipeline">
<version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
<executable name="GATK-GSA-Pipeline">
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" />
<modules>
<module file="QualityScoresRecalibration.xml" />
<module file="LocalRealignmentAroundIndels.xml" />
<module file="UnifiedGenotyper.xml" />
<module file="VariantFiltration.xml" />
<module file="VariantAnnotator.xml" />
<module file="VariantEval.xml" />
<module file="FindContaminatingReadGroups.xml" />
</modules>
<dependencies>
<!-- Filters -->
<package name="org.broadinstitute.sting.gatk.filters" />
</dependencies>
</executable>
</package>