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gatk-3.8
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now only needs READS 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1920 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2009-10-27 21:54:14 +00:00
parent ef2ea79994
commit 31d143a841
1 changed files with 3 additions and 2 deletions
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5
java/src/org/broadinstitute/sting/playground/gatk/walkers/FlagStatReadWalker.java
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@ -6,6 +6,8 @@ import java.text.DecimalFormat;
import java.text.NumberFormat; import java.text.NumberFormat;
import org.broadinstitute.sting.gatk.walkers.ReadWalker; import org.broadinstitute.sting.gatk.walkers.ReadWalker;
import org.broadinstitute.sting.gatk.walkers.Requires;
import org.broadinstitute.sting.gatk.walkers.DataSource;
/* /*
@ -41,9 +43,8 @@ import org.broadinstitute.sting.gatk.walkers.ReadWalker;
* This walker mirrors that stats that are generated by the flagstat * This walker mirrors that stats that are generated by the flagstat
* command of samtools. * command of samtools.
*/ */
@Requires({DataSource.READS})
public class FlagStatReadWalker extends ReadWalker<Integer, Integer> { public class FlagStatReadWalker extends ReadWalker<Integer, Integer> {
// what comes out of the flagstat // what comes out of the flagstat
class FlagStat { class FlagStat {
int readCount = 0; int readCount = 0;