diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/FlagStatReadWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/FlagStatReadWalker.java index 03fe72bbc..f487f8ab8 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/FlagStatReadWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/FlagStatReadWalker.java @@ -6,6 +6,8 @@ import java.text.DecimalFormat; import java.text.NumberFormat; import org.broadinstitute.sting.gatk.walkers.ReadWalker; +import org.broadinstitute.sting.gatk.walkers.Requires; +import org.broadinstitute.sting.gatk.walkers.DataSource; /* @@ -41,9 +43,8 @@ import org.broadinstitute.sting.gatk.walkers.ReadWalker; * This walker mirrors that stats that are generated by the flagstat * command of samtools. */ +@Requires({DataSource.READS}) public class FlagStatReadWalker extends ReadWalker { - - // what comes out of the flagstat class FlagStat { int readCount = 0;