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Updating missed integration test.

This commit is contained in:
Ryan Poplin 2012-10-15 22:31:52 -04:00
parent d27ae67bb6
commit 31be807664
2 changed files with 2 additions and 2 deletions
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2
protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java
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@ -348,7 +348,7 @@ public class LikelihoodCalculationEngine {
}
}
}
// add all filtered reads to the NO_CALL list because they weren't given any likelihoods
for( final GATKSAMRecord read : perSampleFilteredReadList.get(sample.getKey()) ) {
// only count the read if it overlaps the event, otherwise it is not added to the output read list at all

2
public/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java
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@ -21,7 +21,7 @@ public class NanoSchedulerIntegrationTest extends WalkerTest {
for ( final int nct : Arrays.asList(1, 2) ) {
// tests.add(new Object[]{ "SNP", "a1c7546f32a8919a3f3a70a04b2e8322", nt, nct });
//// tests.add(new Object[]{ "INDEL", "0a6d2be79f4f8a4b0eb788cc4751b31b", nt, nct });
tests.add(new Object[]{ "BOTH", "78ce72d8f9d029313f5f2ceb02bb9822", nt, nct });
tests.add(new Object[]{ "BOTH", "f8184e336dec7632408aa9afa98e6914", nt, nct });
}
return tests.toArray(new Object[][]{});