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Better error message for --assume_single_sample_reads screw up 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2916 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-03-03 01:03:10 +00:00
parent 104f4f7383
commit 317fac8dff
1 changed files with 5 additions and 1 deletions
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6
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
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@ -205,7 +205,11 @@ public class UnifiedGenotyper extends LocusWalker<VariantCallContext, UnifiedGen
// use multi-sample mode if we have multiple samples or the output type allows it // use multi-sample mode if we have multiple samples or the output type allows it
else { else {
writer.addMultiSampleCall(value.genotypes, value.variation); try {
writer.addMultiSampleCall(value.genotypes, value.variation);
} catch (IllegalArgumentException e) {
throw new IllegalArgumentException(e.getMessage() + "; this is often caused by using the --assume_single_sample_reads argument with the wrong sample name");
}
} }
return sum; return sum;