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Close BQSRGatherer's PrintStream when finished

This commit is contained in:
Ron Levine 2017-06-26 13:43:09 -04:00
parent fff63bab53
commit 312d97d53b
1 changed files with 1 additions and 1 deletions
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2
public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
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@ -61,8 +61,8 @@ public class BQSRGatherer extends Gatherer {
throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE); throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE);
} }
final GATKReport report = gatherReport(inputs); final GATKReport report = gatherReport(inputs);
outputFile.close();
report.print(outputFile); report.print(outputFile);
outputFile.close();
} }
/** /**