diff --git a/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextUtilsUnitTest.java b/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextUtilsUnitTest.java
index ff26d7245..070fdaca4 100644
--- a/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextUtilsUnitTest.java
+++ b/public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextUtilsUnitTest.java
@@ -304,12 +304,6 @@ public class VariantContextUtilsUnitTest extends BaseTest {
                               makeVC("3", Arrays.asList(Aref, T), VariantContext.PASSES_FILTERS),
                               String.format("1-%s2", VariantContextUtils.MERGE_FILTER_PREFIX));
 
-        new MergeFilteredTest("FailOneUnfiltered",
-                              makeVC("1", Arrays.asList(Aref, T), "FAIL"),
-                              makeVC("2", Arrays.asList(Aref, T), "."),
-                              makeVC("3", Arrays.asList(Aref, T), "."),
-                              String.format("%s1-2", VariantContextUtils.MERGE_FILTER_PREFIX));
-
         new MergeFilteredTest("AllFiltered",
                               makeVC("1", Arrays.asList(Aref, T), "FAIL"),
                               makeVC("2", Arrays.asList(Aref, T), "FAIL"),
@@ -317,6 +311,13 @@ public class VariantContextUtilsUnitTest extends BaseTest {
                               VariantContextUtils.MERGE_FILTER_IN_ALL);
 
         // test ALL vs. ANY
+        new MergeFilteredTest("FailOneUnfiltered",
+                              makeVC("1", Arrays.asList(Aref, T), "FAIL"),
+                              makeVC("2", Arrays.asList(Aref, T), "."),
+                              makeVC("3", Arrays.asList(Aref, T), "."),
+                              VariantContextUtils.FilteredRecordMergeType.KEEP_IF_ANY_UNFILTERED,
+                              String.format("%s1-2", VariantContextUtils.MERGE_FILTER_PREFIX));
+
         new MergeFilteredTest("OneFailAllUnfilteredArg",
                               makeVC("1", Arrays.asList(Aref, T), "FAIL"),
                               makeVC("2", Arrays.asList(Aref, T), "."),
@@ -338,6 +339,18 @@ public class VariantContextUtilsUnitTest extends BaseTest {
                               makeVC("3", Arrays.asList(Aref, T), VariantContext.PASSES_FILTERS),
                               VariantContextUtils.MERGE_INTERSECTION);
 
+        new MergeFilteredTest("RefInAll",
+                              makeVC("1", Arrays.asList(Aref), VariantContext.PASSES_FILTERS),
+                              makeVC("2", Arrays.asList(Aref), VariantContext.PASSES_FILTERS),
+                              makeVC("3", Arrays.asList(Aref), VariantContext.PASSES_FILTERS),
+                              VariantContextUtils.MERGE_REF_IN_ALL);
+
+        new MergeFilteredTest("RefInOne",
+                              makeVC("1", Arrays.asList(Aref), VariantContext.PASSES_FILTERS),
+                              makeVC("2", Arrays.asList(Aref, T), VariantContext.PASSES_FILTERS),
+                              makeVC("3", Arrays.asList(Aref, T), VariantContext.PASSES_FILTERS),
+                              "2");
+
         return MergeFilteredTest.getTests(MergeFilteredTest.class);
     }