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oops forgot to update the md5s 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2093 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2009-11-19 18:22:29 +00:00
parent 6ba1f3321d
commit 306f4624c6
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/playground/gatk/walkers/HapmapPoolAllelicInfoIntegrationTest.java
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@ -22,7 +22,7 @@ public class HapmapPoolAllelicInfoIntegrationTest extends WalkerTest {
+ "-I /humgen/gsa-scr1/GATK_Data/Validation_Data/FHSP_pool3_test.bam "
+ "-R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta -of %s "
+ "-ps 40 -L /humgen/gsa-scr1/GATK_Data/Validation_Data/FHS_test_intervals.interval_list";
String md5ForThisTest = "9e44a04ea574a7f76efbc3a1f8cc710a";
String md5ForThisTest = "da1222d7514f247eae066134d8e3cde3";
WalkerTestSpec spec = new WalkerTestSpec(test_args, 1, Arrays.asList(md5ForThisTest));
executeTest("Pool 3 of FHS Pilot on testbed intervals", spec);
}
@ -35,7 +35,7 @@ public class HapmapPoolAllelicInfoIntegrationTest extends WalkerTest {
+ "-I /humgen/gsa-scr1/GATK_Data/Validation_Data/FHSP_pool3_test.bam "
+ "-R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta -of %s "
+ "-ps 40";
String md5ForThisTest = "571c10a635a84d0bbd453897ef4fb3c6";
String md5ForThisTest = "120f3307d94d613c3559a1051fe3aaef";
WalkerTestSpec spec = new WalkerTestSpec(test_args, 1, Arrays.asList(md5ForThisTest));
executeTest("Pool 3 of FHS Pilot without testbed intervals", spec);
}
@ -48,7 +48,7 @@ public class HapmapPoolAllelicInfoIntegrationTest extends WalkerTest {
+"-I /humgen/gsa-scr1/GATK_Data/Validation_Data/NA12891.a2b.recal.annotation_subset.bam "
+"-L chr1:14000000-18000000 -B calls,Variants,/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12891.a2b.ssg1b.geli.calls "
+"-of %s -R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta -ps 2";
String md5ForThisTest = "46c6a22ab57c40453f29b99a57288e0e";
String md5ForThisTest = "cc81a9d8279e7b6ad50f9dc1f19a7419";
WalkerTestSpec spec = new WalkerTestSpec(test_args, 1, Arrays.asList(md5ForThisTest));
executeTest("Test on pool of two individuals -- CEU father+daughter chips against subset of the father's calls; power at lod 3", spec);