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Updated ordering of integration tests. GVC > VR > AVC 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4669 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-11-14 06:33:28 +00:00
parent 801c562909
commit 2fd816ac5f
1 changed files with 2 additions and 2 deletions
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4
java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
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@ -64,7 +64,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
executeTest("testGenerateVariantClusters-"+params.inVCF, spec).getFirst(); executeTest("testGenerateVariantClusters-"+params.inVCF, spec).getFirst();
} }
@Test(dataProvider = "VRTest", enabled = true) @Test(dataProvider = "VRTest", dependsOnMethods = {"testGenerateVariantClusters"}, enabled = true)
public void testVariantRecalibrator(VRTest params) { public void testVariantRecalibrator(VRTest params) {
//System.out.printf("PARAMS FOR %s is %s%n", vcf, clusterFile); //System.out.printf("PARAMS FOR %s is %s%n", vcf, clusterFile);
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
@ -85,7 +85,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
executeTest("testVariantRecalibrator-"+params.inVCF, spec).getFirst(); executeTest("testVariantRecalibrator-"+params.inVCF, spec).getFirst();
} }
@Test(dataProvider = "VRTest", enabled = true) @Test(dataProvider = "VRTest", dependsOnMethods = {"testVariantRecalibrator"}, enabled = true)
public void testApplyVariantCuts(VRTest params) { public void testApplyVariantCuts(VRTest params) {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-R " + b36KGReference + "-R " + b36KGReference +