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Merged bug fix from Stable into Unstable

This commit is contained in:
Matt Hanna 2011-10-06 10:10:00 -04:00
parent 190be4d0d1 efca1fdfd8
commit 2f12bfaad5
1 changed files with 6 additions and 4 deletions
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10
build.xml
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@ -547,10 +547,12 @@
<target name="vcf.jar" depends="gatk.compile,init.jar">
<jar jarfile="${dist.dir}/vcf.jar">
<classfileset dir="${java.classes}">
<rootfileset dir="${java.classes}" includes="org/broadinstitute/sting/utils/codecs/vcf/**/*.class" />
<rootfileset dir="${java.classes}" includes="org/broadinstitute/sting/utils/variantcontext/**/*.class" />
</classfileset>
<fileset dir="${java.classes}">
<include name="**/utils/codecs/**/*.class"/>
<include name="**/utils/variantcontext/**/*.class"/>
<include name="org/broadinstitute/sting/utils/exceptions/**"/>
<include name="org/broadinstitute/sting/utils/help/DocumentedGATKFeature.class"/>
</fileset>
</jar>
</target>