From 2ee2623926d9354b44339fd0c1da47b43dfcd54d Mon Sep 17 00:00:00 2001 From: hanna Date: Mon, 23 Mar 2009 19:31:38 +0000 Subject: [PATCH] Move non-java code out of playground. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@154 348d0f76-0448-11de-a6fe-93d51630548a --- {playground/c => c}/SeparateQltout.cc | 0 {playground/python => python}/EvalMapping.py | 0 {playground/python => python}/FastaQuals2Fastq.py | 0 {playground/python => python}/MergeEvalMapTabs.py | 0 {playground/python => python}/SAM.py | 0 {playground/python => python}/SamWalk.py | 0 {playground/python => python}/SamWalkTest.py | 0 {playground/python => python}/SimpleSAM.py | 0 {playground/python => python}/SimulateReads.py | 0 {playground/python => python}/SpawnMapperJobs.py | 0 {playground/python => python}/SpawnValidationJobs.py | 0 {playground/python => python}/StressTestGATK.py | 0 {playground/python => python}/WalkLociTest.py | 0 {playground/python => python}/Walker.py | 0 {playground/python => python}/aln_file.nocvs.py | 0 {playground/python => python}/aln_file.py | 0 {playground/python => python}/compSNPCalls.py | 0 {playground/python => python}/countCoverageWithSamtools.py | 0 {playground/python => python}/farm_commands.py | 0 {playground/python => python}/fasta.py | 0 {playground/python => python}/memo.py | 0 {playground/python => python}/pushback_file.py | 0 {playground/python => python}/qltout.py | 0 {playground/python => python}/samtooltest.sh | 0 {playground/python => python}/tgtc2sam.py | 0 {playground/shell => shell}/TraverseTest.sh | 0 {playground/shell => shell}/TraverseTestProf.sh | 0 {playground/shell => shell}/buildRODs.sh | 0 28 files changed, 0 insertions(+), 0 deletions(-) rename {playground/c => c}/SeparateQltout.cc (100%) rename {playground/python => python}/EvalMapping.py (100%) rename {playground/python => python}/FastaQuals2Fastq.py (100%) rename {playground/python => python}/MergeEvalMapTabs.py (100%) rename {playground/python => python}/SAM.py (100%) rename {playground/python => python}/SamWalk.py (100%) rename {playground/python => python}/SamWalkTest.py (100%) rename {playground/python => python}/SimpleSAM.py (100%) rename {playground/python => python}/SimulateReads.py (100%) rename {playground/python => python}/SpawnMapperJobs.py (100%) rename {playground/python => python}/SpawnValidationJobs.py (100%) rename {playground/python => python}/StressTestGATK.py (100%) rename {playground/python => python}/WalkLociTest.py (100%) rename {playground/python => python}/Walker.py (100%) rename {playground/python => python}/aln_file.nocvs.py (100%) rename {playground/python => python}/aln_file.py (100%) rename {playground/python => python}/compSNPCalls.py (100%) rename {playground/python => python}/countCoverageWithSamtools.py (100%) rename {playground/python => python}/farm_commands.py (100%) rename {playground/python => python}/fasta.py (100%) rename {playground/python => python}/memo.py (100%) rename {playground/python => python}/pushback_file.py (100%) rename {playground/python => python}/qltout.py (100%) rename {playground/python => python}/samtooltest.sh (100%) rename {playground/python => python}/tgtc2sam.py (100%) rename {playground/shell => shell}/TraverseTest.sh (100%) rename {playground/shell => shell}/TraverseTestProf.sh (100%) rename {playground/shell => shell}/buildRODs.sh (100%) diff --git a/playground/c/SeparateQltout.cc b/c/SeparateQltout.cc similarity index 100% rename from playground/c/SeparateQltout.cc rename to c/SeparateQltout.cc diff --git a/playground/python/EvalMapping.py b/python/EvalMapping.py similarity index 100% rename from playground/python/EvalMapping.py rename to python/EvalMapping.py diff --git a/playground/python/FastaQuals2Fastq.py b/python/FastaQuals2Fastq.py similarity index 100% rename from playground/python/FastaQuals2Fastq.py rename to python/FastaQuals2Fastq.py diff --git a/playground/python/MergeEvalMapTabs.py b/python/MergeEvalMapTabs.py similarity index 100% rename from playground/python/MergeEvalMapTabs.py rename to python/MergeEvalMapTabs.py diff --git a/playground/python/SAM.py b/python/SAM.py similarity index 100% rename from playground/python/SAM.py rename to python/SAM.py diff --git a/playground/python/SamWalk.py b/python/SamWalk.py similarity index 100% rename from playground/python/SamWalk.py rename to python/SamWalk.py diff --git a/playground/python/SamWalkTest.py b/python/SamWalkTest.py similarity index 100% rename from playground/python/SamWalkTest.py rename to python/SamWalkTest.py diff --git a/playground/python/SimpleSAM.py b/python/SimpleSAM.py similarity index 100% rename from playground/python/SimpleSAM.py rename to python/SimpleSAM.py diff --git a/playground/python/SimulateReads.py b/python/SimulateReads.py similarity index 100% rename from playground/python/SimulateReads.py rename to python/SimulateReads.py diff --git a/playground/python/SpawnMapperJobs.py b/python/SpawnMapperJobs.py similarity index 100% rename from playground/python/SpawnMapperJobs.py rename to python/SpawnMapperJobs.py diff --git a/playground/python/SpawnValidationJobs.py b/python/SpawnValidationJobs.py similarity index 100% rename from playground/python/SpawnValidationJobs.py rename to python/SpawnValidationJobs.py diff --git a/playground/python/StressTestGATK.py b/python/StressTestGATK.py similarity index 100% rename from playground/python/StressTestGATK.py rename to python/StressTestGATK.py diff --git a/playground/python/WalkLociTest.py b/python/WalkLociTest.py similarity index 100% rename from playground/python/WalkLociTest.py rename to python/WalkLociTest.py diff --git a/playground/python/Walker.py b/python/Walker.py similarity index 100% rename from playground/python/Walker.py rename to python/Walker.py diff --git a/playground/python/aln_file.nocvs.py b/python/aln_file.nocvs.py similarity index 100% rename from playground/python/aln_file.nocvs.py rename to python/aln_file.nocvs.py diff --git a/playground/python/aln_file.py b/python/aln_file.py similarity index 100% rename from playground/python/aln_file.py rename to python/aln_file.py diff --git a/playground/python/compSNPCalls.py b/python/compSNPCalls.py similarity index 100% rename from playground/python/compSNPCalls.py rename to python/compSNPCalls.py diff --git a/playground/python/countCoverageWithSamtools.py b/python/countCoverageWithSamtools.py similarity index 100% rename from playground/python/countCoverageWithSamtools.py rename to python/countCoverageWithSamtools.py diff --git a/playground/python/farm_commands.py b/python/farm_commands.py similarity index 100% rename from playground/python/farm_commands.py rename to python/farm_commands.py diff --git a/playground/python/fasta.py b/python/fasta.py similarity index 100% rename from playground/python/fasta.py rename to python/fasta.py diff --git a/playground/python/memo.py b/python/memo.py similarity index 100% rename from playground/python/memo.py rename to python/memo.py diff --git a/playground/python/pushback_file.py b/python/pushback_file.py similarity index 100% rename from playground/python/pushback_file.py rename to python/pushback_file.py diff --git a/playground/python/qltout.py b/python/qltout.py similarity index 100% rename from playground/python/qltout.py rename to python/qltout.py diff --git a/playground/python/samtooltest.sh b/python/samtooltest.sh similarity index 100% rename from playground/python/samtooltest.sh rename to python/samtooltest.sh diff --git a/playground/python/tgtc2sam.py b/python/tgtc2sam.py similarity index 100% rename from playground/python/tgtc2sam.py rename to python/tgtc2sam.py diff --git a/playground/shell/TraverseTest.sh b/shell/TraverseTest.sh similarity index 100% rename from playground/shell/TraverseTest.sh rename to shell/TraverseTest.sh diff --git a/playground/shell/TraverseTestProf.sh b/shell/TraverseTestProf.sh similarity index 100% rename from playground/shell/TraverseTestProf.sh rename to shell/TraverseTestProf.sh diff --git a/playground/shell/buildRODs.sh b/shell/buildRODs.sh similarity index 100% rename from playground/shell/buildRODs.sh rename to shell/buildRODs.sh