One more step in commit to support multi-allelic indel genotyping and processing: utility class that supports multi-allelic genotype likelihoods

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5935 348d0f76-0448-11de-a6fe-93d51630548a

java/src/org/broadinstitute/sting/gatk/walkers/genotyper/MultiallelicGenotypeLikelihoods.java

@@ -0,0 +1,45 @@
+package org.broadinstitute.sting.gatk.walkers.genotyper;
+
+import org.broad.tribble.util.variantcontext.Allele;
+
+import java.util.ArrayList;
+
+/**
+ * Created by IntelliJ IDEA.
+ * User: delangel
+ * Date: 6/1/11
+ * Time: 10:38 AM
+ * To change this template use File | Settings | File Templates.
+ */
+public class MultiallelicGenotypeLikelihoods {
+    private String sample;
+    private double[] GLs;
+    private ArrayList<Allele> alleleList;
+    private int depth;
+
+    public MultiallelicGenotypeLikelihoods(String sample,
+                                         ArrayList<Allele> A,
+                                         double[] log10AALikelihoods, int depth) {
+         this.sample = sample;
+         this.alleleList = A;
+         this.GLs = log10AALikelihoods;
+         this.depth = depth;
+     }
+
+     public String getSample() {
+         return sample;
+     }
+
+      public double[] getLikelihoods() {
+         return GLs;
+     }
+
+     public ArrayList<Allele> getAlleles() {
+         return alleleList;
+     }
+
+     public int getDepth() {
+         return depth;
+     }
+
+}