From 2deae95df92fe726d334f54384b77dede9f116e5 Mon Sep 17 00:00:00 2001 From: sjia Date: Tue, 15 Dec 2009 21:31:47 +0000 Subject: [PATCH] Updated documentation git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2370 348d0f76-0448-11de-a6fe-93d51630548a --- .../playground/gatk/walkers/HLAcaller/CallHLAWalker.java | 9 +-------- .../gatk/walkers/HLAcaller/ImputeAllelesWalker.java | 6 +----- 2 files changed, 2 insertions(+), 13 deletions(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java index 23437241c..73be9cf7e 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java @@ -1,12 +1,5 @@ -/* - * To change this template, choose Tools | Templates - * and open the template in the editor. - */ - package org.broadinstitute.sting.playground.gatk.walkers.HLAcaller; - - import net.sf.samtools.SAMRecord; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; @@ -29,7 +22,7 @@ import java.util.Hashtable; import java.util.List; /** - * + * Original Call HLA walker (older). Look here for inspiration, but not for the most recent tools * @author shermanjia */ public class CallHLAWalker extends LocusWalker>{ diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/ImputeAllelesWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/ImputeAllelesWalker.java index 1ba81b049..9f9eab7ed 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/ImputeAllelesWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/ImputeAllelesWalker.java @@ -1,7 +1,3 @@ -/* - * FindClosestAlleleWalker finds the most similar HLA allele per read - */ - package org.broadinstitute.sting.playground.gatk.walkers.HLAcaller; import net.sf.samtools.SAMRecord; @@ -14,7 +10,7 @@ import java.io.InputStreamReader; import java.util.ArrayList; import java.util.Hashtable; /** - * + * ImputeAllelesWalker fills in missing intronic info for HLA alleles based on the the most similar HLA allele per read * @author shermanjia */ @Requires({DataSource.READS, DataSource.REFERENCE})