diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/IndelSize.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/IndelSize.java index 01b10c502..089351eaa 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/IndelSize.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/IndelSize.java @@ -47,4 +47,8 @@ public class IndelSize extends VariantStratifier { return Collections.emptyList(); } + @Override + public String getFormat() { + return "%d"; + } } diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/VariantType.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/VariantType.java index a9be7c3c0..09b89386f 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/VariantType.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/stratifications/VariantType.java @@ -38,10 +38,12 @@ import java.util.List; public class VariantType extends VariantStratifier { @Override public void initialize() { - states.addAll(Arrays.asList(VariantContext.Type.values())); + for (VariantContext.Type t : VariantContext.Type.values()) + states.add(t.toString()); } public List getRelevantStates(ReferenceContext ref, RefMetaDataTracker tracker, VariantContext comp, String compName, VariantContext eval, String evalName, String sampleName) { - return eval == null ? Collections.emptyList() : Collections.singletonList((Object)eval.getType()); + return eval == null ? Collections.emptyList() : Collections.singletonList((Object)eval.getType().toString()); } + }