From 2c8d7b0c444dc6204e9b96c21ad995bc421d5dfe Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 26 Jan 2010 21:02:46 +0000
Subject: [PATCH] Forgot the onTraversalDone. That was dumb.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2692 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/AlleleBalanceHistogramWalker.java         | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlleleBalanceHistogramWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlleleBalanceHistogramWalker.java
index bf3b0c0e8..d6907c7c3 100644
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlleleBalanceHistogramWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AlleleBalanceHistogramWalker.java
@@ -56,6 +56,17 @@ public class AlleleBalanceHistogramWalker extends RodWalker<Map<String,Double>,
         return getAlleleBalanceBySample(record,ref,context);
     }
 
+    public void onTraversalDone(Map<String,Set<Double>> finalSets) {
+        for ( String s : finalSets.keySet() ) {
+            StringBuilder output = new StringBuilder();
+            output.append(String.format("%s",s));
+            for ( double d : finalSets.get(s) ) {
+                output.append(String.format("\t%.2f",d));
+            }
+            out.print(String.format("%s%n",output));
+        }
+    }
+
     private HashMap<String,Double> getAlleleBalanceBySample(VCFRecord vcf, ReferenceContext ref, AlignmentContext context) {
         Map<String, StratifiedAlignmentContext> sampleContext = StratifiedAlignmentContext.splitContextBySample(context.getBasePileup(),null,null);
         HashMap<String,Double> balances = new HashMap<String,Double>();