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Make -qq arg hidden for now since it's still very experimental

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Eric Banks 2012-07-18 15:43:25 -04:00
parent b46c85e8b4
commit 2c0f073ab1
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/gatk/arguments/GATKArgumentCollection.java
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@ -211,6 +211,7 @@ public class GATKArgumentCollection {
* Any value greater than zero will be used to recalculate the quantization using that many levels. * Any value greater than zero will be used to recalculate the quantization using that many levels.
* Negative values mean that we should quantize using the recalibration report's quantization level. * Negative values mean that we should quantize using the recalibration report's quantization level.
*/ */
@Hidden
@Argument(fullName="quantize_quals", shortName = "qq", doc = "Quantize quality scores to a given number of levels (with -BQSR)", required=false) @Argument(fullName="quantize_quals", shortName = "qq", doc = "Quantize quality scores to a given number of levels (with -BQSR)", required=false)
public int quantizationLevels = 0; public int quantizationLevels = 0;