Moved vector JNI code to public/c++/VectorPairHMM

2014-01-27 14:52:59 -08:00 · 2014-01-27 14:52:59 -08:00 · 2c0d70c863
parent 85a748860e
commit 2c0d70c863
29 changed files with 0 additions and 0 deletions
--- a/public/c++/VectorPairHMM/.gitignore
+++ b/public/c++/VectorPairHMM/.gitignore
--- a/public/c++/VectorPairHMM/JNI_README
+++ b/public/c++/VectorPairHMM/JNI_README
--- a/public/c++/VectorPairHMM/LoadTimeInitializer.cc
+++ b/public/c++/VectorPairHMM/LoadTimeInitializer.cc
--- a/public/c++/VectorPairHMM/LoadTimeInitializer.h
+++ b/public/c++/VectorPairHMM/LoadTimeInitializer.h
--- a/public/c++/VectorPairHMM/Makefile
+++ b/public/c++/VectorPairHMM/Makefile
--- a/public/c++/VectorPairHMM/avx_function_instantiations.cc
+++ b/public/c++/VectorPairHMM/avx_function_instantiations.cc
--- a/public/c++/VectorPairHMM/baseline.cc
+++ b/public/c++/VectorPairHMM/baseline.cc
--- a/public/c++/VectorPairHMM/define-double.h
+++ b/public/c++/VectorPairHMM/define-double.h
--- a/public/c++/VectorPairHMM/define-float.h
+++ b/public/c++/VectorPairHMM/define-float.h
--- a/public/c++/VectorPairHMM/define-sse-double.h
+++ b/public/c++/VectorPairHMM/define-sse-double.h
--- a/public/c++/VectorPairHMM/define-sse-float.h
+++ b/public/c++/VectorPairHMM/define-sse-float.h
--- a/public/c++/VectorPairHMM/headers.h
+++ b/public/c++/VectorPairHMM/headers.h
--- a/public/c++/VectorPairHMM/jni_common.h
+++ b/public/c++/VectorPairHMM/jni_common.h
--- a/public/c++/VectorPairHMM/jnidebug.h
+++ b/public/c++/VectorPairHMM/jnidebug.h
--- a/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc
+++ b/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc
--- a/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h
+++ b/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h
--- a/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc
+++ b/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc
--- a/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h
+++ b/public/c++/VectorPairHMM/org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h
--- a/public/c++/VectorPairHMM/pairhmm-1-base.cc
+++ b/public/c++/VectorPairHMM/pairhmm-1-base.cc
--- a/public/c++/VectorPairHMM/pairhmm-template-kernel.cc
+++ b/public/c++/VectorPairHMM/pairhmm-template-kernel.cc
--- a/public/c++/VectorPairHMM/pairhmm-template-main.cc
+++ b/public/c++/VectorPairHMM/pairhmm-template-main.cc
--- a/public/c++/VectorPairHMM/run.sh
+++ b/public/c++/VectorPairHMM/run.sh
--- a/public/c++/VectorPairHMM/shift_template.c
+++ b/public/c++/VectorPairHMM/shift_template.c
--- a/public/c++/VectorPairHMM/sse_function_instantiations.cc
+++ b/public/c++/VectorPairHMM/sse_function_instantiations.cc
--- a/public/c++/VectorPairHMM/template.h
+++ b/public/c++/VectorPairHMM/template.h
--- a/public/c++/VectorPairHMM/utils.cc
+++ b/public/c++/VectorPairHMM/utils.cc
--- a/public/c++/VectorPairHMM/utils.h
+++ b/public/c++/VectorPairHMM/utils.h
--- a/public/c++/VectorPairHMM/vector_defs.h
+++ b/public/c++/VectorPairHMM/vector_defs.h
--- a/public/c++/VectorPairHMM/vector_function_prototypes.h
+++ b/public/c++/VectorPairHMM/vector_function_prototypes.h