From 2b96b2e4e719d5edd0a7b5feb9fe28e389ef02ae Mon Sep 17 00:00:00 2001 From: ebanks Date: Thu, 29 Oct 2009 13:51:51 +0000 Subject: [PATCH] better multi-sample integration test git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1933 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/genotyper/UnifiedGenotyperIntegrationTest.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index 2c0af0a6c..7e1c44ab0 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -42,8 +42,8 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { @Test public void testMultiSamplePilot1() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( - "-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/low_coverage_CEU.chr1.10k-11k.bam -varout %s -L 1:10,000,000-10,001,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1, - Arrays.asList("d41d8cd98f00b204e9800998ecf8427e")); + "-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/low_coverage_CEU.chr1.10k-11k.bam -varout %s -L 1:10,023,400-10,024,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1, + Arrays.asList("dba7f51b0ddb1afebcd8f229444f70e5")); executeTest("testMultiSamplePilot1", spec); } @@ -51,7 +51,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testMultiSamplePilot2() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/pilot2_daughters.chr20.10k-11k.bam -varout %s -L 20:10,000,000-10,010,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1, - Arrays.asList("394f009c9bad34eb584fa10d133d79e0")); + Arrays.asList("c2a7dd9bec6819b2d7702564955c993b")); executeTest("testMultiSamplePilot2", spec); }