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better multi-sample integration test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1933 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-10-29 13:51:51 +00:00
parent 1c4ca9d383
commit 2b96b2e4e7
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -42,8 +42,8 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
@Test
public void testMultiSamplePilot1() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/low_coverage_CEU.chr1.10k-11k.bam -varout %s -L 1:10,000,000-10,001,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1,
Arrays.asList("d41d8cd98f00b204e9800998ecf8427e"));
"-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/low_coverage_CEU.chr1.10k-11k.bam -varout %s -L 1:10,023,400-10,024,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1,
Arrays.asList("dba7f51b0ddb1afebcd8f229444f70e5"));
executeTest("testMultiSamplePilot1", spec);
}
@ -51,7 +51,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
public void testMultiSamplePilot2() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/pilot2_daughters.chr20.10k-11k.bam -varout %s -L 20:10,000,000-10,010,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1,
Arrays.asList("394f009c9bad34eb584fa10d133d79e0"));
Arrays.asList("c2a7dd9bec6819b2d7702564955c993b"));
executeTest("testMultiSamplePilot2", spec);
}