From 2b895ffb7ffafc7fdf02dcbb7048daeefc89544c Mon Sep 17 00:00:00 2001 From: kshakir Date: Wed, 19 Jan 2011 20:30:25 +0000 Subject: [PATCH] Updated the HG19 reference from v0 to v1 after the v0 was zeroed out. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5023 348d0f76-0448-11de-a6fe-93d51630548a --- java/test/org/broadinstitute/sting/BaseTest.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/BaseTest.java b/java/test/org/broadinstitute/sting/BaseTest.java index 2753c1b37..7998c5f5a 100755 --- a/java/test/org/broadinstitute/sting/BaseTest.java +++ b/java/test/org/broadinstitute/sting/BaseTest.java @@ -43,7 +43,7 @@ public abstract class BaseTest { public static final Logger logger = CommandLineUtils.getStingLogger(); public static final String hg18Reference = "/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta"; - public static final String hg19Reference = "/seq/references/Homo_sapiens_assembly19/v0/Homo_sapiens_assembly19.fasta"; + public static final String hg19Reference = "/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta"; public static final String b36KGReference = "/humgen/1kg/reference/human_b36_both.fasta"; public static final String b37KGReference = "/humgen/1kg/reference/human_g1k_v37.fasta"; public static final String GATKDataLocation = "/humgen/gsa-hpprojects/GATK/data/"; @@ -62,6 +62,7 @@ public abstract class BaseTest { public static final String hg18dbSNP129 = dbsnpDataLocation + "dbsnp_129_hg18.rod"; public static final String b36dbSNP129 = dbsnpDataLocation + "dbsnp_129_b36.rod"; public static final String b37dbSNP129 = dbsnpDataLocation + "dbsnp_129_b37.rod"; + public static final String b37dbSNP132 = dbsnpDataLocation + "dbsnp_132_b37.vcf"; public final String testDir = "testdata/";