From 2ac240d78b06f2a84d58a58e28dcbcf45aa934d6 Mon Sep 17 00:00:00 2001 From: kiran Date: Tue, 21 Apr 2009 23:36:36 +0000 Subject: [PATCH] Removed an extraneous print statement. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@487 348d0f76-0448-11de-a6fe-93d51630548a --- java/src/org/broadinstitute/sting/utils/BasicPileup.java | 2 -- 1 file changed, 2 deletions(-) diff --git a/java/src/org/broadinstitute/sting/utils/BasicPileup.java b/java/src/org/broadinstitute/sting/utils/BasicPileup.java index e5dd049a2..4c9d9b00b 100755 --- a/java/src/org/broadinstitute/sting/utils/BasicPileup.java +++ b/java/src/org/broadinstitute/sting/utils/BasicPileup.java @@ -154,8 +154,6 @@ abstract public class BasicPileup implements Pileup { if (bestBaseIndex >= 0 && bestBaseIndex < 4) { dist[readIndex][bestBaseIndex] = QualityUtils.qualToProb(read.getBaseQualities()[offset]); - System.out.println(bestBaseIndex + " " + dist[readIndex][bestBaseIndex]); - byte[] sqs = (byte[]) read.getAttribute("SQ"); if (sqs != null && QualityUtils.compressedQualityToBaseIndex(sqs[offset]) != bestBaseIndex) { int secondBestBaseIndex = QualityUtils.compressedQualityToBaseIndex(sqs[offset]);