From 2ab55e4ee7976e49e41d9dba50c74eae6e50612a Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Fri, 4 Jan 2013 17:14:32 -0500
Subject: [PATCH] Fixing bug in TraverseDuplicates.printProgress call: only
 passes in single location of genome loc

---
 .../sting/gatk/traversals/TraverseDuplicates.java               | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseDuplicates.java b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseDuplicates.java
index 2e43ef8f8..8ebea8b54 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseDuplicates.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseDuplicates.java
@@ -197,7 +197,7 @@ public class TraverseDuplicates<M,T> extends TraversalEngine<M,T,DuplicateWalker
             }
 
             updateCumulativeMetrics(dataProvider.getShard());
-            printProgress(site);
+            printProgress(site.getStopLocation());
             done = walker.isDone();
         }