From 2a6f3a03c9d4428c758cd959a89e29d6e7386f36 Mon Sep 17 00:00:00 2001 From: ebanks Date: Tue, 8 Sep 2009 14:41:35 +0000 Subject: [PATCH] update script to put pilot1 bams directly onto hphome git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1547 348d0f76-0448-11de-a6fe-93d51630548a --- python/1kgScripts/runme_freeze5.1.csh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python/1kgScripts/runme_freeze5.1.csh b/python/1kgScripts/runme_freeze5.1.csh index ba401c18c..05d741445 100755 --- a/python/1kgScripts/runme_freeze5.1.csh +++ b/python/1kgScripts/runme_freeze5.1.csh @@ -1,3 +1,3 @@ -python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa lists/low_coverage_freeze5.list -n lists/naids_and_pop.txt -python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa -s lists/trios_freeze5.list +python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d /humgen/gsa-hphome1/projects/1kg_pilot1/mergedBamsByPopulation/ -q gsa /broad/1KG/DCC_merged/lists/low_coverage_freeze5.list -n /broad/1KG/DCC_merged/lists/naids_and_pop.txt +python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa -s /broad/1KG/DCC_merged/lists/trios_freeze5.list