diff --git a/python/1kgScripts/runme_freeze5.1.csh b/python/1kgScripts/runme_freeze5.1.csh
index ba401c18c..05d741445 100755
--- a/python/1kgScripts/runme_freeze5.1.csh
+++ b/python/1kgScripts/runme_freeze5.1.csh
@@ -1,3 +1,3 @@
-python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa lists/low_coverage_freeze5.list -n lists/naids_and_pop.txt
-python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa -s lists/trios_freeze5.list
+python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d /humgen/gsa-hphome1/projects/1kg_pilot1/mergedBamsByPopulation/ -q gsa /broad/1KG/DCC_merged/lists/low_coverage_freeze5.list -n /broad/1KG/DCC_merged/lists/naids_and_pop.txt
+python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa -s /broad/1KG/DCC_merged/lists/trios_freeze5.list