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Actually should have been gone...

This commit is contained in:
Mark DePristo 2011-07-25 13:27:42 -04:00
parent ebfd8df06c
commit 2a51543693
1 changed files with 0 additions and 48 deletions
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48
public/java/test/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedDataUnitTest.java
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package org.broadinstitute.sting.gatk.refdata;
import org.testng.Assert;
import org.broadinstitute.sting.BaseTest;
import org.testng.annotations.Test;
import java.util.ArrayList;
import java.util.List;
/**
*
* @author aaron
*
* Class ReferenceOrderedDataUnitTest
*
* some functionality to test parts of the reference ordered data system that I've added. This is by NO MEANS
* a complete test suite, but additions would be extremely welcome
*/
public class ReferenceOrderedDataUnitTest extends BaseTest {
@Test
public void extractRodsFromFileTest() {
String file = validationDataLocation + "testRODFileImpl.csv";
List<String> lst = new ArrayList<String>();
ReferenceOrderedData.extractRodsFromFile(lst,file);
Assert.assertEquals(lst.size(), 6);
int index = 0;
for (String entry: lst) {
String first = entry.subSequence(0,entry.indexOf(",")).toString();
Assert.assertTrue(first.equals("rod" + String.valueOf(++index)));
}
}
@Test
public void extractRodsFromMultiFileTest() {
String file = validationDataLocation + "testRODFileImpl.csv";
String file2 = validationDataLocation + "testRODFileImpl2.csv";
List<String> lst = new ArrayList<String>();
ReferenceOrderedData.extractRodsFromFile(lst,file);
ReferenceOrderedData.extractRodsFromFile(lst,file2);
Assert.assertEquals(lst.size(), 12);
int index = 0;
for (String entry: lst) {
String first = entry.subSequence(0,entry.indexOf(",")).toString();
Assert.assertTrue(first.equals("rod" + String.valueOf(++index)));
}
}
}