diff --git a/public/java/test/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedDataUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedDataUnitTest.java deleted file mode 100644 index fa20ea913..000000000 --- a/public/java/test/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedDataUnitTest.java +++ /dev/null @@ -1,48 +0,0 @@ -package org.broadinstitute.sting.gatk.refdata; - -import org.testng.Assert; -import org.broadinstitute.sting.BaseTest; - -import org.testng.annotations.Test; - -import java.util.ArrayList; -import java.util.List; - - -/** - * - * @author aaron - * - * Class ReferenceOrderedDataUnitTest - * - * some functionality to test parts of the reference ordered data system that I've added. This is by NO MEANS - * a complete test suite, but additions would be extremely welcome - */ -public class ReferenceOrderedDataUnitTest extends BaseTest { - @Test - public void extractRodsFromFileTest() { - String file = validationDataLocation + "testRODFileImpl.csv"; - List lst = new ArrayList(); - ReferenceOrderedData.extractRodsFromFile(lst,file); - Assert.assertEquals(lst.size(), 6); - int index = 0; - for (String entry: lst) { - String first = entry.subSequence(0,entry.indexOf(",")).toString(); - Assert.assertTrue(first.equals("rod" + String.valueOf(++index))); - } - } - @Test - public void extractRodsFromMultiFileTest() { - String file = validationDataLocation + "testRODFileImpl.csv"; - String file2 = validationDataLocation + "testRODFileImpl2.csv"; - List lst = new ArrayList(); - ReferenceOrderedData.extractRodsFromFile(lst,file); - ReferenceOrderedData.extractRodsFromFile(lst,file2); - Assert.assertEquals(lst.size(), 12); - int index = 0; - for (String entry: lst) { - String first = entry.subSequence(0,entry.indexOf(",")).toString(); - Assert.assertTrue(first.equals("rod" + String.valueOf(++index))); - } - } -}