zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

minor improvements and bug fixes 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3376 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-05-18 15:54:42 +00:00
parent 43544cfdf9
commit 2a212c497f
1 changed files with 5 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
python/igvController.py
View File

@ -14,11 +14,13 @@ import faiReader
import math import math
import shutil import shutil
import string import string
import time
from madPipelineUtils import * from madPipelineUtils import *
HOST = 'vm0e0-052.broadinstitute.org' # Symbolic name meaning the local host HOST = 'vm0e0-052.broadinstitute.org' # Symbolic name meaning the local host
PORT = 60151 # Arbitrary non-privileged port PORT = 60151 # Arbitrary non-privileged port
LOCAL_DIR = "/Users/depristo/Desktop/IGV_screenshots" LOCAL_DIR = "/Users/depristo/Desktop/IGV_screenshots"
SLEEP_TIME = 1
def main(): def main():
global OPTIONS global OPTIONS
@ -50,7 +52,7 @@ an IGV session. See http://www.broadinstitute.org/igv/?q=PortCommands. Make su
def sendCommand(cmd): def sendCommand(cmd):
s.send(cmd) s.send(cmd)
print s.recv(512).trim() print cmd.strip(), '=>', s.recv(512).strip()
s.connect((OPTIONS.host, PORT)) s.connect((OPTIONS.host, PORT))
sendCommand("snapshotDirectory " + OPTIONS.dir + "\n") sendCommand("snapshotDirectory " + OPTIONS.dir + "\n")
@ -64,6 +66,8 @@ an IGV session. See http://www.broadinstitute.org/igv/?q=PortCommands. Make su
if OPTIONS.wait: if OPTIONS.wait:
raw_input("Enter To Continue") raw_input("Enter To Continue")
else: else:
print 'sleep', SLEEP_TIME, 'secs'
time.sleep(SLEEP_TIME)
sendCommand("snapshot\n") # %s.png\n" % re.sub("-","_",re.sub(':', '_', site))) sendCommand("snapshot\n") # %s.png\n" % re.sub("-","_",re.sub(':', '_', site)))
print c print c