zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Explicitly set logger's level to info - otherwise samtools is too chatty 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5209 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2011-02-07 17:08:50 +00:00
parent 3c1a026c94
commit 2a04e0d378
1 changed files with 1 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
java/src/org/broadinstitute/sting/playground/tools/SortROD.java
View File

@ -43,7 +43,6 @@ import java.io.*;
import java.util.*;
import net.sf.samtools.util.SortingCollection;
import net.sf.samtools.SAMSequenceDictionary;
import net.sf.picard.reference.ReferenceSequenceFile;
import net.sf.picard.reference.ReferenceSequenceFileFactory;
@ -69,7 +68,7 @@ public class SortROD {
*/
public static void main(String[] args) {
BasicConfigurator.configure();
logger.setLevel(org.apache.log4j.Level.INFO);
// check yourself before you wreck yourself - we require one arg, the input file
if (args.length != 3 )
printUsage();