From 29ca24694a9f819e5c709c82149a5b431a22a787 Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Tue, 22 Nov 2011 08:22:32 -0500 Subject: [PATCH] UG now encoding NO_CALLs as ./. not ./.:.:4:0,0,0 A few updated UGs integration tests --- .../walkers/genotyper/UnifiedGenotyperIntegrationTest.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index 95b5855c1..34e1ad30e 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -29,7 +29,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testMultiSamplePilot1() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( baseCommand + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam -o %s -L 1:10,022,000-10,025,000", 1, - Arrays.asList("f5c8bd653aed02059b9f377833eae5bb")); + Arrays.asList("286f0de92e4ce57986ba861390c6019d")); executeTest("test MultiSample Pilot1", spec); } @@ -45,7 +45,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { public void testWithAllelesPassedIn2() { WalkerTest.WalkerTestSpec spec2 = new WalkerTest.WalkerTestSpec( baseCommand + " --output_mode EMIT_ALL_SITES --genotyping_mode GENOTYPE_GIVEN_ALLELES -alleles " + validationDataLocation + "allelesForUG.vcf -I " + validationDataLocation + "pilot2_daughters.chr20.10k-11k.bam -o %s -L 20:10,000,000-10,025,000", 1, - Arrays.asList("030ce4feb4bbcf700caba82a45cc45f2")); + Arrays.asList("d0593483e85a7d815f4c5ee6db284d2a")); executeTest("test MultiSample Pilot2 with alleles passed in and emitting all sites", spec2); }