diff --git a/scala/qscript/oneoffs/carneiro/justClean.scala b/scala/qscript/oneoffs/carneiro/justClean.scala index 7c6de8f48..1d0ba9b6d 100755 --- a/scala/qscript/oneoffs/carneiro/justClean.scala +++ b/scala/qscript/oneoffs/carneiro/justClean.scala @@ -45,7 +45,7 @@ class justClean extends QScript { target.mismatchFraction = 0.0 target.rodBind :+= RodBind("dbsnp", "VCF", dbSNP) target.rodBind :+= RodBind("indels", "VCF", indels) - target.memoryLimit = 4 + target.memoryLimit = 6 target.jobName = queueLogDir + tIntervals + ".atarget" target.jarFile = GATKjar target.scatterCount = 84 @@ -62,7 +62,7 @@ class justClean extends QScript { clean.doNotUseSW = false clean.jobName = queueLogDir + outBam + ".clean" clean.jarFile = GATKjar - clean.memoryLimit = 6 + clean.memoryLimit = 8 clean.scatterCount = 84 add(target, clean);