zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Added unit test to ensure that we genotype correctly cases with really large GLs

This commit is contained in:
Eric Banks 2012-04-12 15:43:14 -04:00
parent 818e8c2fb9
commit 297afc7911
1 changed files with 14 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationModelUnitTest.java
View File

@ -94,4 +94,18 @@ public class ExactAFCalculationModelUnitTest extends BaseTest {
Assert.assertEquals(calculatedAlleleCount, expectedAlleleCount); Assert.assertEquals(calculatedAlleleCount, expectedAlleleCount);
} }
} }
@Test
public void testLargeGLs() {
final double[] BB = new double[]{-20000000.0, -20000000.0, 0.0};
GetGLsTest cfg = new GetGLsTest("B6", 1, createGenotype("1", BB), createGenotype("2", BB), createGenotype("3", BB));
final AlleleFrequencyCalculationResult result = new AlleleFrequencyCalculationResult(2);
ExactAFCalculationModel.linearExactMultiAllelic(cfg.GLs, cfg.numAltAlleles, priors, result);
int calculatedAlleleCount = result.getAlleleCountsOfMAP()[0];
Assert.assertEquals(calculatedAlleleCount, 6);
}
} }