diff --git a/build.xml b/build.xml index 1f29887cf..cfaa9114e 100644 --- a/build.xml +++ b/build.xml @@ -74,7 +74,7 @@ - + @@ -326,6 +326,10 @@ + + + + @@ -341,6 +345,7 @@ + @@ -842,6 +847,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -863,8 +894,9 @@ - - + + + @@ -878,15 +910,30 @@ - + + - - + + + + + + + + + + - - - + + + + + + + + + @@ -1134,6 +1181,7 @@ + + + + + + + + + - - - - - - - - + + + + + + + - - - - - - - - - diff --git a/public/packages/CreatePackager.xsl b/public/packages/CreatePackager.xsl index 956b63a5e..a89b6bb35 100644 --- a/public/packages/CreatePackager.xsl +++ b/public/packages/CreatePackager.xsl @@ -100,21 +100,6 @@ - - - - - - - - - - - - - - - diff --git a/public/packages/GATKEngine.xml b/public/packages/GATKEngine.xml index 68459f6d2..78f3f0cea 100644 --- a/public/packages/GATKEngine.xml +++ b/public/packages/GATKEngine.xml @@ -47,5 +47,12 @@ + + + + + + + diff --git a/public/packages/GenomeAnalysisTK.xml b/public/packages/GenomeAnalysisTK.xml index 7c6d4ce02..d57d12f64 100644 --- a/public/packages/GenomeAnalysisTK.xml +++ b/public/packages/GenomeAnalysisTK.xml @@ -1,4 +1,29 @@ + + + @@ -11,22 +36,9 @@ - - - - - - - - - - - + + + - - - - - diff --git a/public/packages/GenomeAnalysisTKLite.xml b/public/packages/GenomeAnalysisTKLite.xml new file mode 100644 index 000000000..809259f8b --- /dev/null +++ b/public/packages/GenomeAnalysisTKLite.xml @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/public/packages/Queue.xml b/public/packages/Queue.xml index 86902ae99..c74ef9912 100644 --- a/public/packages/Queue.xml +++ b/public/packages/Queue.xml @@ -23,60 +23,21 @@ ~ OTHER DEALINGS IN THE SOFTWARE. --> + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + - - + + + diff --git a/public/packages/QueueEngine.xml b/public/packages/QueueEngine.xml new file mode 100644 index 000000000..af3e20219 --- /dev/null +++ b/public/packages/QueueEngine.xml @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/public/packages/QueueLite.xml b/public/packages/QueueLite.xml new file mode 100644 index 000000000..425fd8433 --- /dev/null +++ b/public/packages/QueueLite.xml @@ -0,0 +1,42 @@ + + + + + + + + + + + + + + + + + + + +