From 285e61a227e87904daef86ae4423f44406568c23 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Tue, 10 Apr 2012 08:31:09 -0400
Subject: [PATCH] Bugfix for IndelSummary

-- multi allelic count should be % not ratio
---
 .../sting/gatk/walkers/varianteval/evaluators/IndelSummary.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java
index b4062fb10..198172411 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java
@@ -215,7 +215,7 @@ public class IndelSummary extends VariantEvaluator implements StandardEval {
     }
 
     public void finalizeEvaluation() {
-        percent_of_sites_with_more_than_2_alleles = Utils.formattedRatio(n_multiallelic_indel_sites, nIndelSites);
+        percent_of_sites_with_more_than_2_alleles = Utils.formattedPercent(n_multiallelic_indel_sites, nIndelSites);
         SNP_to_indel_ratio = Utils.formattedRatio(n_SNPs, n_indels);
         SNP_to_indel_ratio_for_singletons = Utils.formattedRatio(n_singleton_SNPs, n_singleton_indels);