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Bugfix for IndelSummary 

-- multi allelic count should be % not ratio
This commit is contained in:
Mark DePristo 2012-04-10 08:31:09 -04:00
parent adc519f7d1
commit 285e61a227
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/IndelSummary.java
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@ -215,7 +215,7 @@ public class IndelSummary extends VariantEvaluator implements StandardEval {
}
public void finalizeEvaluation() {
percent_of_sites_with_more_than_2_alleles = Utils.formattedRatio(n_multiallelic_indel_sites, nIndelSites);
percent_of_sites_with_more_than_2_alleles = Utils.formattedPercent(n_multiallelic_indel_sites, nIndelSites);
SNP_to_indel_ratio = Utils.formattedRatio(n_SNPs, n_indels);
SNP_to_indel_ratio_for_singletons = Utils.formattedRatio(n_singleton_SNPs, n_singleton_indels);