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removes unused titv argument 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5025 348d0f76-0448-11de-a6fe-93d51630548a
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corin 2011-01-19 20:49:12 +00:00
parent 50fcebb0c4
commit 2824e8224c
1 changed files with 2 additions and 2 deletions
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4
scala/test/org/broadinstitute/sting/queue/pipeline/FullCallingPipelineTest.scala
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@ -91,9 +91,9 @@ class FullCallingPipelineTest extends BaseTest {
// Run the pipeline with the expected inputs.
var pipelineCommand = ("-retry 1 -S scala/qscript/fullCallingPipeline.q" +
" -jobProject %s -Y %s -refseqTable %s -titv %s" +
" -jobProject %s -Y %s -refseqTable %s" +
" --gatkjar %s/dist/GenomeAnalysisTK.jar")
.format(projectName, yamlFile, dataset.refseq, dataset.targetTiTv, new File(".").getAbsolutePath)
.format(projectName, yamlFile, dataset.refseq, new File(".").getAbsolutePath)
if (!dataset.runIndelRealigner) {
pipelineCommand += " -skipCleaning"