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Bringing IndelGenotyper back to life 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2770 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2010-02-03 20:12:49 +00:00
parent 3f35e181d5
commit 280f38f635
2 changed files with 12 additions and 0 deletions
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1
packages/GenomeAnalysisTK.xml
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@ -12,6 +12,7 @@
<module file="VariantFiltration.xml" /> <module file="VariantFiltration.xml" />
<module file="VariantAnnotator.xml" /> <module file="VariantAnnotator.xml" />
<module file="VCFValidator.xml" /> <module file="VCFValidator.xml" />
<module file="IndelGenotyper.xml" />
</modules> </modules>
<dependencies> <dependencies>
<!-- Filters --> <!-- Filters -->

11
packages/IndelGenotyper.xml 100644
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@ -0,0 +1,11 @@
<?xml version="1.0" encoding="UTF-8"?>
<package name="IndelGenotyper">
<executable name="IndelGenotyper">
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" />
<dependencies>
<!-- Local realignment around indels -->
<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker" />
</dependencies>
</executable>
</package>