From 280f38f63522f19ee29bd2099450189b8291918a Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 3 Feb 2010 20:12:49 +0000
Subject: [PATCH] Bringing IndelGenotyper back to life

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2770 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GenomeAnalysisTK.xml |  1 +
 packages/IndelGenotyper.xml   | 11 +++++++++++
 2 files changed, 12 insertions(+)
 create mode 100644 packages/IndelGenotyper.xml

diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml
index ef68f0874..fac86ced4 100644
--- a/packages/GenomeAnalysisTK.xml
+++ b/packages/GenomeAnalysisTK.xml
@@ -12,6 +12,7 @@
       <module file="VariantFiltration.xml" />
       <module file="VariantAnnotator.xml" />
       <module file="VCFValidator.xml" />
+      <module file="IndelGenotyper.xml" />
     </modules>
     <dependencies>
       <!-- Filters -->
diff --git a/packages/IndelGenotyper.xml b/packages/IndelGenotyper.xml
new file mode 100644
index 000000000..c9e3ae0f6
--- /dev/null
+++ b/packages/IndelGenotyper.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<package name="IndelGenotyper">
+  <executable name="IndelGenotyper">
+    <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
+    <resource-bundle file="StingText.properties" />
+    <dependencies>
+      <!-- Local realignment around indels -->
+      <class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker" />
+    </dependencies>
+  </executable>
+</package>