diff --git a/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java b/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java index c4536d176..f3d9edab9 100755 --- a/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java +++ b/java/src/org/broadinstitute/sting/utils/sam/GATKSAMRecord.java @@ -83,7 +83,7 @@ public class GATKSAMRecord extends SAMRecord { // sanity check that the lengths of the base and quality strings are equal if ( getBaseQualities().length != getReadLength() ) - throw new UserException.MalformedBAM(this, String.format("Error: the number of base qualities does not match the number of bases in %s. Use -DBQ x to set a default base quality score to all reads so GATK can proceed.", mRecord.getReadName())); + throw new UserException.MalformedBAM(this, String.format("Error: the number of base qualities does not match the number of bases in %s.", mRecord.getReadName())); } ///////////////////////////////////////////////////////////////////////////////