From 2799a1b686763543b95e7815809aa898cc2de101 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Wed, 25 Jan 2012 12:15:51 -0500
Subject: [PATCH] Catch exception for bad type and throw as a TribbleException

---
 .../sting/utils/codecs/vcf/VCFCompoundHeaderLine.java      | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFCompoundHeaderLine.java b/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFCompoundHeaderLine.java
index bb822f2ed..97166833b 100755
--- a/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFCompoundHeaderLine.java
+++ b/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFCompoundHeaderLine.java
@@ -24,6 +24,7 @@
 
 package org.broadinstitute.sting.utils.codecs.vcf;
 
+import org.broad.tribble.TribbleException;
 import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
 
 import java.util.Arrays;
@@ -149,7 +150,11 @@ public abstract class VCFCompoundHeaderLine extends VCFHeaderLine implements VCF
             count = Integer.valueOf(numberStr);
 
         }
-        type = VCFHeaderLineType.valueOf(mapping.get("Type"));
+        try {
+            type = VCFHeaderLineType.valueOf(mapping.get("Type"));
+        } catch (Exception e) {
+            throw new TribbleException(mapping.get("Type") + " is not a valid type in the VCF specification (note that types are case-sensitive)");
+        }
         if (type == VCFHeaderLineType.Flag && !allowFlagValues())
             throw new IllegalArgumentException("Flag is an unsupported type for this kind of field");