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Oops. numReads is now called size 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2175 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2009-11-29 06:59:17 +00:00
parent 21744e024b
commit 27651d8dc2
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/playground/gatk/walkers/PercentOfBasesCoveredWalker.java
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@ -32,7 +32,7 @@ public class PercentOfBasesCoveredWalker extends LocusWalker<Boolean, Pair<Integ
} }
public Boolean map(RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) { public Boolean map(RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) {
return context.numReads() > minDepth; return context.size() > minDepth;
} }
public Pair<Integer,Integer> reduce(Boolean map, Pair<Integer,Integer> prevReduce) { public Pair<Integer,Integer> reduce(Boolean map, Pair<Integer,Integer> prevReduce) {