zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Updates to not depend on an environment variable to figure out where libraries are (helpful for installation at the Sanger). 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3655 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2010-06-28 15:46:41 +00:00
parent 9a24598a98
commit 26ef1f84bf
8 changed files with 24 additions and 8 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
perl/reports/1KG/AssembleSlides.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
my %args = &getCommandArguments("DIR" => undef, "OUT" => undef); my %args = &getCommandArguments("DIR" => undef, "OUT" => undef);

4
perl/reports/1KG/GenerateDataProcessingReport.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use DistributedMake; use DistributedMake;
use DataTable; use DataTable;

4
perl/reports/1KG/GenerateDataProcessingReport2.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use DistributedMake; use DistributedMake;
use DataTable; use DataTable;

4
perl/reports/1KG/GetSNPsPerSample.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
my %args = &getCommandArguments("VCF" => undef, "OUT" => "/dev/stdout"); my %args = &getCommandArguments("VCF" => undef, "OUT" => "/dev/stdout");

4
perl/reports/1KG/MakeDPRSlides.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use File::Basename; use File::Basename;
use DistributedMake; use DistributedMake;

4
perl/reports/1KG/MakeTopSheetSlide.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use DistributedMake; use DistributedMake;
use DataTable; use DataTable;

4
perl/reports/1KG/MakeVennSlide.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use DistributedMake; use DistributedMake;
use Data::Dumper; use Data::Dumper;

4
perl/reports/1KG/RenderTemplate.pl
View File

@ -1,7 +1,9 @@
#!/usr/bin/perl -w #!/usr/bin/perl -w
use strict; use strict;
use lib "$ENV{'STING_DIR'}/perl"; use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs; use StingArgs;
use Data::Dumper; use Data::Dumper;