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Updates to not depend on an environment variable to figure out where libraries are (helpful for installation at the Sanger). 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3655 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2010-06-28 15:46:41 +00:00
parent 9a24598a98
commit 26ef1f84bf
8 changed files with 24 additions and 8 deletions
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4
perl/reports/1KG/AssembleSlides.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
my %args = &getCommandArguments("DIR" => undef, "OUT" => undef);

4
perl/reports/1KG/GenerateDataProcessingReport.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use DistributedMake;
use DataTable;

4
perl/reports/1KG/GenerateDataProcessingReport2.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use DistributedMake;
use DataTable;

4
perl/reports/1KG/GetSNPsPerSample.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
my %args = &getCommandArguments("VCF" => undef, "OUT" => "/dev/stdout");

4
perl/reports/1KG/MakeDPRSlides.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use File::Basename;
use DistributedMake;

4
perl/reports/1KG/MakeTopSheetSlide.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use DistributedMake;
use DataTable;

4
perl/reports/1KG/MakeVennSlide.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use DistributedMake;
use Data::Dumper;

4
perl/reports/1KG/RenderTemplate.pl
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@ -1,7 +1,9 @@
#!/usr/bin/perl -w
use strict;
use lib "$ENV{'STING_DIR'}/perl";
use FindBin;
use lib "$FindBin::Bin/../../";
use StingArgs;
use Data::Dumper;