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Merge pull request #1498 from broadinstitute/rhl_warn_to_stderr_1497 

Write saved WARN messages to stderr instead of stdout
This commit is contained in:
Valentin Ruano Rubio 2016-10-24 17:01:37 -04:00 committed by GitHub
parent 0d2a3e754c d7090ef158
commit 26d033d725
1 changed files with 3 additions and 3 deletions
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6
public/gatk-utils/src/main/java/org/broadinstitute/gatk/utils/commandline/CommandLineProgram.java
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@ -363,10 +363,10 @@ public abstract class CommandLineProgram {
* @param listAppender Appender for saving logging messages to a list
*/
private static void printDoneAndLogMessages(final ListAppender listAppender) {
System.out.println("------------------------------------------------------------------------------------------");
System.out.print("Done. ");
System.err.println("------------------------------------------------------------------------------------------");
System.err.print("Done. ");
listAppender.write();
System.out.println("------------------------------------------------------------------------------------------");
System.err.println("------------------------------------------------------------------------------------------");
}
/**