From 26a6f816c972f8d713e084b291961a314d597ea1 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 18 Aug 2009 16:17:09 +0000
Subject: [PATCH] set default value for output format

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1434 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../playground/gatk/walkers/indels/IndelGenotyperWalker.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java
index 22f5a0494..83d91a3ab 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java
@@ -31,7 +31,7 @@ public class IndelGenotyperWalker extends ReadWalker<Integer,Integer> {
     @Argument(fullName="outputFile", shortName="O", doc="output file name (defaults to BED format)", required=true)
     java.io.File bed_file;
     @Argument(fullName="1kg_format", shortName="1kg", doc="output in 1000 genomes format", required=false)
-    boolean FORMAT_1KG;
+    boolean FORMAT_1KG = false;
 	@Argument(fullName="somatic", shortName="somatic",
 			doc="Perform somatic calls; two input alignment files must be specified", required=false)
 	boolean call_somatic = false;